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Adding Variables After combineTCR() or combineBCR()

Source: R/addVariable.R
addVariable.Rd

This function adds variables to the product of combineTCR(), or combineBCR() to be used in later visualizations. For each element, the function will add a column (labeled by variable.name) with the variable. The length of the variables parameter needs to match the length of the combined object.

Usage

addVariable(input.data, variable.name = NULL, variables = NULL)

Arguments

input.data

The product of combineTCR() or combineBCR().

variable.name

A character string that defines the new variable to add.

variables

A character vector defining the desired column value for each list element. Must match the length of the product of combineTCR() or combineBCR().

Value

input.data list with the variable column added to each element.

Examples

combined <- combineTCR(contig_list, 
                       samples = c("P17B", "P17L", "P18B", "P18L", 
                                    "P19B","P19L", "P20B", "P20L"))
combined <- addVariable(combined, 
                        variable.name = "Type", 
                        variables = rep(c("B", "L"), 4))