Subset the product of combineTCR() or combineBCR()

This function allows for the subsetting of the product of combineTCR() or combineBCR() by the name of the individual list element.

subsetClones(input.data, name, variables = NULL)

Arguments

input.data: The product of combineTCR() or combineBCR().
name: The column header/name to use for subsetting.
variables: The values to subset by, must be in the names(input.data).

Value

list of contigs that have been filtered for the name parameter

Examples

combined <- combineTCR(contig_list, 
                        samples = c("P17B", "P17L", "P18B", "P18L", 
                                    "P19B","P19L", "P20B", "P20L"))
subset <- subsetClones(combined, name = "sample", variables = c("P17B"))