Skip to contents

Example SAB (Class I/II) and PRA Panels

Source: R/data.R
deepMatchR_example.Rd

A small, fixed-format example object demonstrating the input structure used by this package’s utilities for single antigen bead (SAB) Class I / Class II and panel reactive antibody (PRA) data. Useful for examples, vignettes, and unit tests without requiring PHI or proprietary vendor exports.

Usage

data(deepMatchR_example)

Format

A named list of length 3 containing data frames as described above.

Details

Structure: a named list of length 3:

  • ClassI_example: data frame with columns BeadID (`integer`), SpecAbbr (`character`, antigen abbreviations), Specificity (`character`, comma-delimited allele list), NormalValue (`numeric`, normalized MFI or vendor-provided normalization), RawData (`numeric`, raw MFI), CountValue (`integer`, bead/event count).

  • ClassII_example: same schema as Class I, but for class II specificities (e.g., DR, DQ, DP).

  • PRA: data frame with columns BeadID (`integer`), SpecAbbr (`character`), Specificity (`character`), NormalValue (`numeric` or `NA`), RawData (`numeric`), CountValue (`integer`).

Notes: - Column names are kept vendor-agnostic but mimic common exports. - SpecAbbr values are comma-separated antigen abbreviations with padding dashes, e.g., `"A2,-,-,-,..."`. - Specificity values are comma-separated IMGT/HLA alleles aligned to the abbreviations in SpecAbbr. - NormalValue may be NA when not supplied by the instrument export or when illustrative only.

See also

deepMatchR_eplets, deepMatchR_cregs