Software

Ibex
Autoencoder for single-cell BCR
PDF Code Follow
Ibex
scRepertoire v2
A toolkit for single-cell immune profiling
Code Follow
scRepertoire v2
Trex
Autoencoder for single-cell TCR
Code Follow
Trex
Mapping the immune environment in clear cell renal carcinoma by single-cell genomics
Clear cell renal cell carcinoma (ccRCC) is one of the most immunologically distinct tumor types due to high response rate to …
Nick Borcherding, Ajaykumar Vishwakarma, Andrew P. Voigt, Andrew Bellizzi, Jacob Kaplan, Kenneth Nepple, Aliasger K Salem, Russell W Jenkins, Yousef Zakharia, Weizhou Zhang
PDF Cite Code DOI Pubmed
Mapping the immune environment in clear cell renal carcinoma by single-cell genomics
scRepertoire: An R-based toolkit for single-cell immune receptor analysis
Single-cell sequencing is an emerging technology in the field of immunology and oncology that allows researchers to couple RNA …
Nick Borcherding, Nicholas Bormann, Gloria Kraus
PDF Cite Code DOI Pubmed
scRepertoire: An R-based toolkit for single-cell immune receptor analysis